Imagine stepping into your kitchen and being greeted by the scent of apples, cinnamon, and warm baked goodness. That’s exactly what these Apple Cinnamon Greek Yogurt Muffins bring to the table. Soft on the inside with a sweet, crumbly streusel top, they are just right for crisp mornings, busy weekdays, or when you simply want a feel-good snack. Greek yogurt adds moisture, richness, and a light tang, making these muffins wholesome without sacrificing flavor. Whether you’re a seasoned baker or just starting out, this is a no-fuss, comforting bake you’ll turn to often.

Table of Contents
Why You’ll Love This Recipe
These muffins check every box when it comes to flavor, texture, and simplicity. Greek yogurt gives them a soft and tender bite while boosting the protein. The combination of fresh apples and warm spices makes them feel like a cozy fall hug. Best of all, they come together quickly using everyday ingredients and freeze well for later.
Ingredients You’ll Need
Here’s what you’ll need to gather for this delicious, spiced muffin recipe.
For the Streusel Topping:
- ⅓ cup all-purpose flour – Provides structure to the crumb topping.
- 1 tablespoon quick oats – Adds a rustic texture.
- ½ teaspoon ground cinnamon – For a warm, spicy finish.
- 2 tablespoons brown sugar – Brings sweetness and depth.
- 2 tablespoons cold butter – Creates that classic, buttery crumb.
Dry Ingredients:
- ½ cup all-purpose flour – A light flour that balances the heartiness of the whole wheat.
- ¾ cup whole wheat flour – Adds fiber and a subtle nutty taste.
- 2 tablespoons cornstarch – Softens the crumb and gives the muffins a delicate texture.
- 1 teaspoon baking powder – Lifts the batter and helps them rise.
- ¼ teaspoon salt – Highlights the sweetness and enhances overall flavor.
- 1 teaspoon cinnamon – Adds a comforting spice throughout the muffin.
- ½ teaspoon apple pie spice – Brings a blend of fall flavors like nutmeg and allspice.
Wet Ingredients:
- 1 large egg – Acts as a binder and adds structure.
- ¾ cup plain Greek yogurt – Adds moisture, tang, and protein to the batter.
- ¼ cup oil – Keeps the muffins soft and tender.
- 2 tablespoons maple syrup – Sweetens naturally and adds flavor depth.
- 1 teaspoon vanilla extract – Rounds out the flavors with a hint of warmth.
- ⅓ cup light brown sugar – Adds sweetness and helps retain moisture.
Add-Ins:
- 1 cup chopped apples – Peeled and diced. Use firm, slightly tart apples like Granny Smith or Honeycrisp for the best bite.
How to Make Apple Cinnamon Greek Yogurt Muffins
These muffins are straightforward and beginner-friendly. After preparing the streusel, you’ll mix the dry ingredients, whisk the wet ones, and then combine everything. The apples go in last, followed by a generous topping of streusel before baking.

Step-by-Step Instructions
Step 1: Preheat and Line
Preheat your oven to 375°F. Prepare a 12-cup muffin pan with liners or lightly grease it.
Step 2: Prepare the Streusel
In a small bowl, mix flour, oats, cinnamon, and brown sugar. Add cold butter and cut it in with your fingers or a pastry cutter until the mixture resembles coarse crumbs. Set aside.
Step 3: Mix Dry Ingredients
In a separate bowl, whisk together the flours, cornstarch, baking powder, salt, cinnamon, and apple pie spice.
Step 4: Combine Wet Ingredients
In a large mixing bowl, beat the egg. Add the Greek yogurt, oil, maple syrup, vanilla, and brown sugar. Stir until fully combined and smooth.
Step 5: Mix Batter
Add the dry ingredients to the wet mixture and stir just until combined. Avoid overmixing, which can make muffins dense.
Step 6: Fold in Apples
Gently stir in the chopped apples. Be sure they’re evenly spread throughout the batter.
Step 7: Portion and Top
Divide the batter evenly between the 12 muffin cups. Sprinkle each with the streusel topping you prepared earlier.
Step 8: Bake
Bake for 22 to 25 minutes, or until the tops are golden and a toothpick inserted into the center comes out clean.
Step 9: Cool and Serve
Let the muffins rest in the pan for 5 minutes, then transfer them to a cooling rack. Enjoy them warm or at room temperature.
Helpful Tips
- Mix with care: Stir only until ingredients come together. Overmixing leads to dense muffins.
- Use firm apples: Softer varieties break down too much. Stick with Honeycrisp or Granny Smith.
- Cool completely before storing: This prevents sogginess.
- Make ahead: Freeze cooled muffins for up to three months. Thaw overnight or reheat briefly in the microwave.
Details
Flavor: Sweet with cinnamon and hints of vanilla
Texture: Moist and fluffy with a buttery crumb topping
Occasion: Ideal for breakfast, snacks, or cozy gatherings
Prep Time: 25 minutes
Cook Time: 25 minutes
Total Time: 50 minutes
Yield: 12 muffins
Notes (Optional Variations or Substitutions)
- Swap maple syrup for honey or agave for a different twist.
- Use all-purpose flour only if you prefer a softer muffin.
- Add chopped nuts like pecans for added crunch.
- Substitute vanilla Greek yogurt for added sweetness.
Nutritional Information (Per Muffin)
| Nutrient | Amount |
|---|---|
| Calories | 180 |
| Total Fat | 6g |
| Saturated Fat | 2g |
| Protein | 4g |
| Total Carbs | 28g |
| Sugar | 12g |
| Fiber | 2g |
| Sodium | 90mg |

Frequently Asked Questions (FAQ)
Does Greek yogurt help keep muffins soft?
Yes, Greek yogurt adds moisture and structure, giving the muffins a tender texture without excess fat.
What’s the best apple for baking muffins?
Firm apples like Honeycrisp or Granny Smith maintain their texture during baking and balance the sweetness with a little tartness.
Can yogurt be used instead of butter or oil?
It can replace part or all of the oil. In this recipe, yogurt is used alongside a small amount of oil for the best texture.
How can I avoid dense muffins?
Stir gently and only until combined. Overmixing is the most common reason for heavy muffins.
Storage Instructions
After baking, let the muffins cool completely before storing. Place them in an airtight container and keep at room temperature for up to three days. For longer freshness, refrigerate them for up to five days or freeze for up to three months. To reheat, simply microwave for 20–30 seconds or let thaw overnight.
Print
Apple Cinnamon Greek Yogurt Muffins Recipe | A Cozy, Moist Fall Favorite
- Total Time: 50 minutes
- Yield: 12 muffins 1x
- Diet: Vegetarian
Description
These Apple Cinnamon Greek Yogurt Muffins are packed with real apples, warm spices, and topped with a buttery oat streusel. Moist, tender, and perfect for cozy mornings or snack breaks.
Ingredients
For the Streusel Topping:
⅓ cup all-purpose flour
1 tablespoon quick oats
½ teaspoon ground cinnamon
2 tablespoons brown sugar
2 tablespoons cold butter
Dry Ingredients:
½ cup all-purpose flour
¾ cup whole wheat flour
2 tablespoons cornstarch
1 teaspoon baking powder
¼ teaspoon salt
1 teaspoon ground cinnamon
½ teaspoon apple pie spice
Wet Ingredients:
1 large egg
¾ cup plain Greek yogurt
¼ cup oil
2 tablespoons maple syrup
1 teaspoon vanilla extract
⅓ cup light brown sugar
Add-Ins:
1 cup peeled and chopped apples
Instructions
1. Preheat the oven to 375°F and prepare a 12-cup muffin pan with liners or non-stick spray.
2. Make the streusel topping by combining flour, oats, cinnamon, and brown sugar. Cut in cold butter until crumbly.
3. In a medium bowl, whisk together all-purpose flour, whole wheat flour, cornstarch, baking powder, salt, cinnamon, and apple pie spice.
4. In a large bowl, whisk the egg, yogurt, oil, maple syrup, vanilla, and brown sugar until well blended.
5. Gently stir the dry ingredients into the wet mixture until just combined.
6. Fold in the chopped apples.
7. Spoon the batter into the muffin cups, filling them about ¾ full.
8. Top each muffin with a generous amount of streusel.
9. Bake for 22 to 25 minutes until a toothpick comes out clean.
10. Cool for 5 minutes in the pan, then transfer to a wire rack to cool completely.
Notes
Swap maple syrup with honey or agave if preferred.
Add chopped walnuts or pecans for crunch.
Use vanilla-flavored Greek yogurt to enhance sweetness.
Muffins freeze well for up to 3 months.
- Prep Time: 25 minutes
- Cook Time: 25 minutes
- Category: Breakfast, Snacks
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 180
- Sugar: 12g
- Sodium: 90mg
- Fat: 6g
- Saturated Fat: 2g
- Unsaturated Fat: 4g
- Trans Fat: 0g
- Carbohydrates: 28g
- Fiber: 2g
- Protein: 4g
- Cholesterol: 20mg
Conclusion
If you’re looking for a muffin recipe that’s both satisfying and simple, these Apple Cinnamon Greek Yogurt Muffins are just what you need. With a moist interior, chunks of juicy apple, and a crumbly topping, they offer everything you want in a homemade bake. The use of Greek yogurt not only adds richness but also makes them a better-for-you choice. Whether you enjoy them fresh out of the oven or from the freezer stash, they bring comfort and flavor to your table. Try them soon, and make a batch to share.