Few snacks balance flavor and nutrition as well as bagel bites. These High-Protein Bagel Bites are a smart spin on a familiar favorite, made with a simple yogurt-based dough and filled with high-protein toppings. Whether you’re fueling a busy afternoon, prepping meals for the week, or looking for a satisfying post-workout option, this recipe checks every box. Quick to prepare, freezer-friendly, and customizable, these bites are a go-to solution for health-conscious snackers.

Table of Contents
Why You’ll Love This Recipe
There’s no need to wait for dough to rise or worry about complicated prep. This recipe uses no yeast and minimal ingredients, making it perfect for beginners or busy cooks. The blend of lean meats and Greek yogurt provides a satisfying dose of protein, while the crispy, cheesy finish makes these bites irresistible. They’re also great for kids, easy to store, and reheat beautifully.
Ingredients You’ll Need
These ingredients work together to deliver bold flavor, satisfying texture, and balanced nutrition.
Greek Yogurt
This ingredient does double duty by acting as the moisture in the dough and boosting the protein content. Be sure to use plain, unsweetened yogurt, preferably full-fat or low-fat for the best consistency.
Self-Rising Flour
Essential for creating lift in the dough without yeast. If you don’t have it, combine 1 cup of all-purpose flour with 1½ teaspoons of baking powder and ½ teaspoon of salt to make your own.
Shredded Mozzarella
Adds a melty, gooey finish on top. Opt for part-skim mozzarella for a good balance of melt and lower fat content.
Cooked Lean Beef Sausage
Offers savory richness and adds protein without being greasy. Chop it finely so the flavor is evenly distributed.
Turkey Ham
A lean, flavorful addition that provides saltiness and extra texture. It complements the sausage without overpowering it.
Tomato Sauce
A thin layer adds moisture and helps tie all the toppings together. Choose one without added sugar to keep it clean.
Garlic Powder and Oregano
Classic seasonings that enhance the dough and toppings with familiar pizzeria flavors.
Red Pepper Flakes (Optional)
For those who enjoy a little heat, a small pinch goes a long way.
How to Make High-Protein Bagel Bites
With no need to rise or rest the dough, these protein bites come together fast. The yogurt-based dough is easy to work with and requires just a quick knead. Then you’ll top each round with sauce, cheese, and meats, and bake until golden. In less than 30 minutes, you’ll have a fresh batch of homemade, protein-packed snacks.

Step-by-Step Instructions
Step 1: Mix the Dough
In a medium-sized bowl, stir together 1 cup of Greek yogurt and 1 cup of self-rising flour until a rough dough forms. Transfer to a lightly floured surface and knead for 2 to 3 minutes until smooth. Add a little extra flour if needed to reduce stickiness.
Step 2: Divide and Flatten
Preheat your oven to 375°F (190°C). Shape the dough into a log and cut it into 12 equal sections. Roll each into a ball, then press down slightly to form a thick disc. Arrange on a lined baking sheet.
Step 3: Add Tomato Base
Spoon a bit of tomato sauce onto each dough round, spreading it across the top without covering the edges.
Step 4: Layer Cheese and Protein
Sprinkle mozzarella evenly across each piece. Then add chopped lean sausage and diced turkey ham, pressing gently so the toppings stay put.
Step 5: Season the Tops
Sprinkle oregano and garlic powder across all the bites. If you like a little kick, add a light dusting of red pepper flakes.
Step 6: Bake Until Golden
Place in the oven and bake for 18 to 20 minutes. You’re looking for bubbling cheese and golden edges.
Step 7: Cool Briefly Before Serving
Let them sit for a few minutes out of the oven. This helps the dough set and makes them easier to handle.
Step 8: Store or Pack for Later
After cooling completely, transfer to a storage container. These bites are great cold or reheated and stay fresh for several days.
Helpful Tips
To keep them soft and chewy, avoid baking past the 20-minute mark. Line your tray with parchment to prevent sticking and simplify cleanup. If making ahead, store them in layers with parchment between to avoid sogginess. For reheating, skip the microwave and use a toaster oven or air fryer for the best results.
This Greek yogurt dough method skips the need for yeast but still delivers that bagel-like chew. It’s fast, protein-rich, and holds up well to freezing or refrigeration.
Details
Flavor:
Savory and cheesy with subtle herb notes and a slight tang from the yogurt dough.
Texture:
Crispy edges with a tender, chewy inside. The melted cheese and meaty toppings give every bite depth.
Occasion:
Perfect for weekly meal prep, snack trays, or after-school munchies.
Prep Time:
10 minutes
Cook Time:
18 to 20 minutes
Total Time:
30 minutes
Notes and Optional Variations
Feel free to substitute ingredients to suit your preferences. You can swap the sausage and ham for chopped vegetables or plant-based protein. Use whole wheat flour for added fiber but slightly increase the yogurt to maintain a soft dough. If avoiding dairy, use non-dairy yogurt and vegan cheese for a plant-based version.
Nutritional Information (Per Serving)
| Nutrient | Amount |
|---|---|
| Calories | 140 |
| Protein | 10g |
| Fat | 6g |
| Carbohydrates | 12g |
| Sugar | 1g |

Nutrition values are approximate and based on a 12-serving batch.
Frequently Asked Questions
What makes these bagel bites high in protein?
Greek yogurt in the dough and lean toppings like sausage, turkey ham, and mozzarella boost the protein content significantly.
Can I make this without yeast?
Yes. This recipe uses self-rising flour and yogurt, removing the need for yeast or rising time.
Are they good for prepping ahead?
Absolutely. Make a batch, refrigerate, and reheat as needed. They keep well and taste just as good reheated.
How do I keep them soft and not dry?
Watch the bake time and store them properly. Use a toaster oven to reheat so they maintain texture.
Storage Instructions
Allow the bagel bites to cool fully before storing. Place them in an airtight container and keep refrigerated for up to four days. When reheating, use a toaster oven or air fryer at 350°F for 3 to 4 minutes. To freeze, wrap them individually in foil and store in a freezer-safe bag. Reheat directly from frozen, adding a couple of extra minutes to the cooking time.
Print
High-Protein Bagel Bites | Easy, Chewy and Guilt-Free Snack
- Total Time: 30 minutes
- Yield: 12 bagel bites 1x
Description
These high-protein bagel bites are easy, chewy, and made without yeast. Using Greek yogurt dough and lean toppings, they’re perfect for meal prep or on-the-go snacks.
Ingredients
1 cup plain Greek yogurt (unsweetened, full-fat or low-fat)
1 cup self-rising flour (or 1 cup all-purpose flour + 1½ tsp baking powder + ½ tsp salt)
½ cup shredded mozzarella cheese
¼ cup cooked lean beef sausage, finely chopped
¼ cup chopped turkey ham
2 tablespoons tomato sauce (no sugar added)
½ teaspoon dried oregano
½ teaspoon garlic powder
Pinch of red pepper flakes (optional)
Instructions
1. Mix yogurt and self-rising flour in a bowl until a dough forms.
2. Knead dough on a floured surface for 2 to 3 minutes until smooth.
3. Preheat oven to 375°F. Shape dough into a log and cut into 12 pieces. Flatten into rounds.
4. Place on a parchment-lined baking sheet. Add a small spoonful of tomato sauce to each.
5. Top with mozzarella cheese, sausage, and turkey ham.
6. Season with oregano, garlic powder, and red pepper flakes.
7. Bake for 18–20 minutes until edges are golden and cheese is bubbly.
8. Let cool for a few minutes before serving or storing.
Notes
Swap meat for vegetables or plant-based proteins if preferred.
Use dairy-free yogurt and cheese for a vegan version.
Reheat in an air fryer or toaster oven for the best texture.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Category: Snacks
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 bite
- Calories: 140
- Sugar: 1g
- Sodium: 320mg
- Fat: 6g
- Saturated Fat: 2.5g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 12g
- Fiber: 1g
- Protein: 10g
- Cholesterol: 20mg
Conclusion
High-Protein Bagel Bites are the perfect mix of comfort and clean eating. Easy to make, flexible in ingredients, and full of satisfying flavor, these bites are the kind of snack you can feel good about. Whether you need a quick lunchbox addition, a post-workout fix, or just something savory and warm, this recipe delivers every time. Try a batch, share with family, and enjoy a healthier version of a snack-time favorite.